Description

I am a young bioinformatician passionate about biotechnologies and bioinformatics, especially analysis of genomic data. I love programming in Python and designing pipelines using Nextflow. My two years experience in Germany was a great opportunity to open myself to new cultures and work in very different environments from those where I learned in France.

Link to GitHub: github.com/chloea31

Link to Researchgate: researchgate.net/profile/Chloe-Aujoulat/publications

Domaines d’expertise

Langues

Français
Bilingue ou natif
Anglais
Capacité professionnelle complète
Allemand
Notions

Préférences en matière de lieu de travail

Accepte de travailler sur site

Toulouse (jusqu’à 50 km), Bordeaux (jusqu’à 50 km)

ERA-Bio-IT (Company)
Bioinformatician
CENTRES DE RECHERCHE
juin 2024 - décembre 2025 (1 an et 6 mois)
Toulouse, France
Construction and analysis of a maize pangenome (Python, Bash, Nextflow, R). Use of Minigraph, PGGB and Minigraph-Cactus to build pangenomes. Pangenome analysis: partitioning the pangenome using Panacus, variant calling using VG tools (VG deconstruct). Statistical analysis (VG stats). Filtering variants (VCFtools). Data interpretation and protocol validation. Automation of workflow for the construction and analysis of pangenomes. Participation in the creation of a R&D project to submit a technical proposal: project suggestions related to pangenomic and modelisation. HPC SLURM.
Attending lectures and poster presentations in Jobim conferences (in Toulouse in 2024 and in Bordeaux in 2025).

After finishing the contract:
- International CBRNe conference (Arcachon, May 2026)
- Eurosatory (Paris, June 2026)
Nextflow Bash Slurm Génomique Python
RWTH Aachen (University)
Research Assistant (PhD)
CENTRES DE RECHERCHE
août 2022 - novembre 2023 (1 an et 3 mois)
Aix-la-Chapelle, Allemagne
Study from the genotype to the phenotype on tomato glandular trichomes, using metabolic modelling (Python, pandas, plotly, scikit-learn, PyMC). Git. Part of HDS-LEE graduate school (RWTH Aachen and Research Center in Jülich). Teaching assistant for data visualization. Establishment of a notation system enhancing all skills and in favor of students who try to do something, instead of punishment. Participation in the Night of Science.
Presentation of a poster in the conference in Innsbruck (ISGSB conference) - September 2022.
Presentation of a poster for HDS- LEE evaluation in Jülich - February 2023
Python Analyse de données Data visualisation Recherche bibliographique Tutorat
Hochschule Mittweida (University)
Research Assistant (Master
CENTRES DE RECHERCHE
janvier 2022 - août 2022 (7 mois)
Mittweida, Allemagne
Detection and evaluation of sequence variations in the sheep poodle genome (dog) (Python, Bash, pandas and plotly). Designing pipeline using FastQC, SAMtools, BCFtools, Clustal Omega, MUSCLE, Iq-tree, and VSEARCH. Performing in silico SNP-array. Phylogenetic reconstruction. Manipulation of GEO database, Nanopore sequencing data, and Illumina SNP-probe data. Data interpretation and protocol validation. Visualization of Nanopore manipulation. Git. Statistical analysis.
Poster presentation in Brandenburg (NWK conference): presentation of the psoster.
Bash Python Data visualisation Phylogénie Génomique